Gee, John. ""Choose the Things That Please Me": On the Selection of the Isaiah Sections in the Book of Mormon." In Isaiah in the Book of Mormon, edited by Donald W. Parry and John W. Welch, 67-91. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1998.

Tvedtnes, John A., John Gee, and Matthew Roper. "Book of Mormon Names Attested in Ancient Hebrew Inscriptions." Journal of Book of Mormon Studies 9, no. 1 (2000): 40-51, 78-79.

"Appendix B: The Sufi Philosophers and Kolob." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 511. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Appendix C: MS Huntington 388." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 513-519. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Tvedtnes, John A., and Brian M. Hauglid. "Editors' Introduction." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, xvi–xxxviii. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

"Muslim Traditions about the Early Life of Abraham." In Traditions about the Early Life of Abraham, edited by John A. Tvedtnes, Brian M. Hauglid and John Gee, 289-463. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Traditions about the Early Life of Abraham In Studies in the Book of Abraham, Edited by John A. Tvedtnes, Brian M. Hauglid, John Gee and John Gee. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Traditions about the Early Life of Abraham In Studies in the Book of Abraham, Edited by John A. Tvedtnes, Brian M. Hauglid, John Gee and John Gee. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2001.

Hoskisson, Paul Y., Brian M. Hauglid, and John Gee. "What’s in a Name? Irreantum." Journal of Book of Mormon Studies 11, no. 1 (2002): 90-93, 114-115.

Gee, John, and Matthew Roper. ""I Did Liken All Scriptures Unto Us": Early Nephite Understandings of Isaiah and Implications for "Others" in the Land." In The Fulness of the Gospel: Foundational Teachings from the Book of Mormon, edited by Camille Fronk Olson, Brian M. Hauglid, Patty Smith and Thomas A. Wayment, 51-65. Provo, UT: Religious Studies Center, 2003.

Hauglid, Brian M.. "The Book of Abraham and Muslim Tradition." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 131-146. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Abraham and Idrimi." Journal of the Book of Mormon and Other Restoration Scripture 22, no. 1 (2013): 34-39.

Gee, John. "A Different Way of Seeing the Hand of the Lord." Religious Educator: Perspectives on the Restored Gospel 16, no. 2 (2015): 11-127.

Gee, John. "How Not to Read Isaiah." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 37 (2020): 29-40.

Gee, John. "How Not to Read Isaiah." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 37 (2020): 29-40.